rs29527331 SNP Detail

Summary

• ID
  rs29527331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84568658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAATACAGA ACAGGGGAAG GAGAGAACTG TGGCACCAGA AACCAAGTGA TGGCAGGGCG
  CAAACTCAGG CAGATAGGAC TATGAATTAC CAAATGTTGA TCAGCTTTTT TTTTTTTTTT
  TTTGAATAAA CAGGACAAAC ATTGGTGGTG GGGCTAGACC ACAGAAAAGC AAAGATGGAG
  TGAAATTCTG GTCTCAGATA TCAGGGCCCC AGAGTCTGAG GGTAGTTTAT CCACCCCCCA
  CTCTTGGTTT AAAAAAAATA AAGGATCGGA TGGGGCCAAT AGAAGGAAAA CCAAACCCTA
  R
  ACCCTGGGAA TCAGTGACAG GGGTTTCCAT TTCACTCCAC TGTTTACCTT AGCACTAAAG
  AGGCACTTTC AAGTATCTAA TCTTTGCCAT TGGGTGGGGT GGGAAAAGCT GCTCCAAGAA
  CAGCCCCCAC CCCTAGCCGG CTGTTGCCAG AGAGAGCAGT CTTTACAGGC ATTCCCCAAG
  GCTCAGCCAC TGCTCCCGAG GTCCCCGCCC TCTGGAGGAG GCGGATCATC AGCGCTGAGG
  GACCAGTCTT TCCTGTGACT GCCACCAGCG AACGAAACTT TTGTATGATA CATAAAGTGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45328258	mCV23820543	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs29527331					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84568658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11864	CpG island 11864	1354 bp distal
Rr560318	regulatory region 560318	202 bp proximal
Rr560319	regulatory region 560319	431 bp proximal
Tssr18678	transcription start site region 18678	176 bp downstream
Ypel4	yippee like 4	mRNA-UTR