rs29527529 SNP Detail

Summary

• ID
  rs29527529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100246588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGAGAATCA GGAGTTTGAG GCCAGCCTGC ACTACGTGAC AAGATACTGT CTCAAAGAAA
  GATAATCGCT TTGACTTTTT TTTTTTTTTT TTTTGGTTTT TTTTTTTCGA GACAGGGTTT
  CTCTGTATAG CCCTGGAACT CACTCTGTAG ACCAGACTGG CCTTGAACTC AGAAATCCAC
  CTGCCTCTGC CTCTGCCTCT GCCTCCCAAG TGCTGGGATC TTAAAGGTGT GTGTGCCACC
  AGCGCCTGGC ATGCTTTAAC TTTTTTTTTT AAATTCATTT TGCCTGTGTG TGTGTGTGTG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGGAGAGAG AGATGAAGAG
  AGAGAGAAAG AGAAAGAAAG AGACTGAGAC TGTGTATCTG TGTGTTTTCT TGGCCCAAGC
  AAAATCTTAA AACTCTTAAA TGCGGTTGCA GATTATCATG TTCCAAAGGG GAACAGAGAG
  CTTGGAGGCA GAGTTCAGGG TTACATTACA TGCTTTGCAC ACTGGAGCTG CCAGTTCAAT
  CCCCAGGACC ACGCATACAC AACAGAAATG TAGTTCCAAG TTATAAGTTC TATCATGACA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39083225	mCV24699365	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss145082853	ENSMUSSNP4295739	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss324506108	CHEV_13_100880035	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29527529					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100246588 () rs orientation: forward

Symbol	Name	Function Class
BC001981	cDNA sequence BC001981	1741 bp upstream
Cpgi6030	CpG island 6030	1498 bp distal
Rr280857	regulatory region 280857	787 bp distal
Serf1	small EDRK-rich factor 1	within coordinates
Tssr120841	transcription start site region 120841	1937 bp downstream
Tssr120842	transcription start site region 120842	1913 bp downstream
Tssr123774	transcription start site region 123774	1897 bp upstream
Tssr123775	transcription start site region 123775	966 bp upstream