rs29527552 SNP Detail

Summary

• ID
  rs29527552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46343444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGGGAAG GCTTTCCATA
  CAAGTCCTAA AAGCCATTTA CAGAAACTTG GAGGAGTGTT TTGAATGCAG AAGACCTGGC
  AGCAAGTAGG AAGGCTCAGC TCTCTTCTAT TGAGAACTTG GCTCTCATGA GTGGCCTGGG
  GAGACAGGCG TTGCTTTTTC AGGAGGCATG CAGAGAAACA ACAGCCACCT GGCATCCTTC
  Y
  TGCCAGCATC TTTCACAAAC AGCACACAAC AGTAGTTCAG CTGAACAGCA GATGACCATA
  AAGCACTCAG AGCTAAGTGA GCTCTCTGAG CAGAGACAAG AACCCTGGAG GCACCTGGCA
  AACGTAATGG TAGAATATAT TTTTTTAACT TCTTGTTTTT CCCTCTTGAC TGAAATCACC
  CCTTCTAGTC GCATGCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39083628	mCV23254454	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss61787362	NES17720969	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T	T	T	T
ss148971884	ENSMUSSNP7057103	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29527552					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61787362	NES17720969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46343444 () rs orientation: forward

Symbol	Name	Function Class
Gm10113	predicted gene 10113	within coordinates
Rr272082	regulatory region 272082	844 bp distal
Rr276190	regulatory region 276190	1444 bp distal