rs29527558 SNP Detail

Summary

• ID
  rs29527558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24908099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCATGGA GATTAGAGGA CTCCCAGATG GACAAAATCC
  AAAATCCAGA ACTTAGCACC CATCTCCTAA ATGCCTAGGA CAGGGAAGAC ATTCGCTAAT
  R
  AGATAGATTA CTCCCCGTCT CTAGCTTCCA TGCCATTTCC AGGAAGCCCT CCCAGATGAG
  CCCCTTCTAG CTACAGCAGC AGGGAGCCTC CTTATGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39581124	mCV24347432	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145361351	ENSMUSSNP6336856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29527558					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24908099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8737	CpG island 8737	1254 bp distal
Cpgi8738	CpG island 8738	380 bp proximal
Rr339325	regulatory region 339325	within coordinates
Rr405090	regulatory region 405090	1985 bp downstream
Syngr3	synaptogyrin 3	within coordinates
Tssr146762	transcription start site region 146762	755 bp downstream
Tssr146763	transcription start site region 146763	776 bp downstream