rs29527870 SNP Detail

Summary

• ID
  rs29527870
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137640163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCCTTC CCTTCACACA
  GCTCACAGCC CCAGGCCCTC AGCCCATCTG AGCCAGGAAG AAAGCAGCTG CCGCCTTCCA
  GGCACCTGGC TACTGAGCCG ACTGCAGAAG CCCCAGGTAG GCACCAGGTC GGCACCAGGT
  CGTGCTGTTT TTACCCACAA GGCCCCAGAG AGTCCGAGCC TGTTCTAATC TCGTCTCTCT
  S
  GTTCACAGTA CGTCTTTCTC CCCGGGTGAC CTCCCAGGTC ACCCCCTCAA GGATGTCTCC
  ACTGCCACTT CGGGATCCCA GCCACCAGGC TAATGCAGGA CCTCGGCTGG TGGTGAGCTG
  GGGGGTTTGT GACTGTGTCT CCAGGTAGCA GGGGTGCCAA GAGAGGTGGA ACTCTGACTT
  CCTGTTCTCC ACAGGAGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45828502	mCV25206068	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss144532957	ENSMUSSNP6158964	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss321702667	CHEV_5_138083129	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29527870					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137640163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	410 bp distal
Gm20605	predicted gene 20605	within coordinates
Irs3	insulin receptor substrate 3	1131 bp downstream
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	802 bp downstream
Sap25	sin3 associated polypeptide	within coordinates
Tssr49364	transcription start site region 49364	566 bp downstream