rs29528630 SNP Detail

Summary

• ID
  rs29528630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12475263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTGCCT AGTGTGATGA
  GGCCCTGGGT TCTGTGCCAG CACTGCAAAA CCAAACAAAT CAAAAGCAGT AAATACAAAT
  AAAATACAAG CTAGGAAATA ACACAAAACC AAGACACAAA TATCACTCAA GCAGTGCTTT
  GAAACCAGGA CAATATTCAT TTAACTTTTC CTATTAGTAA AACAAGTAGG AATCACATCA
  Y
  AGGATTGCCC TGAGGATTGT ACTAGTTTAA ATAGCAGAAA ACAGCTCTGT ATGTGTTAGC
  TATTATTGCT AGAAAACATT GCTCTTCTTC AACCAGCCAA ATTAAGTAAG TTGAGGGTGG
  GGTGGGGGTG GCAGAGTTAC TCCGGGGAAT ACCAAATGCA ATGTTTTGCA TCAGCCCGGT
  TTTGAAAGAT AAGAGCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39083137	mCV22708330	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148681932	ENSMUSSNP364325	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29528630					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12475263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	577 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	201 bp upstream
Rr369647	regulatory region 369647	767 bp upstream
Tssr118345	transcription start site region 118345	288 bp upstream
Tssr121451	transcription start site region 121451	1256 bp upstream
Tssr121452	transcription start site region 121452	1100 bp upstream
Tssr121453	transcription start site region 121453	717 bp downstream
Tssr121454	transcription start site region 121454	1028 bp downstream
Tssr121455	transcription start site region 121455	1050 bp downstream
Tssr121456	transcription start site region 121456	1156 bp downstream
Tssr121457	transcription start site region 121457	1180 bp downstream