rs29528821 SNP Detail

Summary

• ID
  rs29528821
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGAGTTCC CTCGTCGCCT CCCCCAGAAT CCAAACACAT
  CTCAACTTCA GTCCTAGCTG ATTCAGAGCT GCCCTCCCCC CAGGAGACCC TGACCCCACA
  K
  TCCTCCTTCA CTCACTTGTC CAGTACGAAG TACAAATCGA AGGCTTTTTT GCAAGAGGGC
  TGCTCCTGGG CTTGCAGCAA CGACCCCGGA CCGCCCACA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45827434	mCV25003313	ABI	CRAMUS_MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29528821					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178241 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	268 bp upstream
Rr615103	regulatory region 615103	570 bp proximal
Tssr1554	transcription start site region 1554	570 bp downstream
Tssr47433	transcription start site region 47433	313 bp upstream
Tssr47434	transcription start site region 47434	343 bp upstream
Tssr47435	transcription start site region 47435	713 bp upstream
Tssr47436	transcription start site region 47436	882 bp upstream
Tssr47437	transcription start site region 47437	917 bp upstream
Tssr51988	transcription start site region 51988	188 bp downstream
Tssr51989	transcription start site region 51989	235 bp downstream
Tssr51990	transcription start site region 51990	248 bp downstream
Tssr51991	transcription start site region 51991	345 bp downstream
Tssr51992	transcription start site region 51992	415 bp downstream
Tssr51993	transcription start site region 51993	588 bp downstream
Tssr51994	transcription start site region 51994	612 bp downstream
Tssr51995	transcription start site region 51995	755 bp downstream
Tssr51996	transcription start site region 51996	915 bp downstream
Tssr51997	transcription start site region 51997	953 bp downstream
Tssr51998	transcription start site region 51998	993 bp downstream
Tssr51999	transcription start site region 51999	1028 bp downstream
Tssr52000	transcription start site region 52000	1049 bp downstream
Tssr52001	transcription start site region 52001	1069 bp downstream
Tssr52002	transcription start site region 52002	1089 bp downstream
Tssr52003	transcription start site region 52003	1131 bp downstream