rs29529264 SNP Detail

Summary

• ID
  rs29529264
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31206552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCTTCC CAGACGAGTC
  CCAGGGTTCT TCTGCCAGCT CTCCTTGCAC GAATGCTGTG CGTGGTGCAA TGGCACGACT
  ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAA ATATATAGTG ATGCTTGAGT ACGCTGTGTA CCTGCAGCCC TTTAACACTT
  S
  CCAAACCATG CCTGTCAGGT GGAGAAGTCT CTGGAGAGGA CACAGTATAG TCAAGTAATA
  ATGCACAAAC ACGAGGATCT TCTCTCGTAC AGTGCGCTGA TTTGGTGCGG GGGTTTTAAG
  GGAAAAAAAT GGGTTCTGTT TACAAAAGGC ACTTTTCCGC TTTGCATTAT GGGAATTCTG
  GAAAGGCTAC TGACTTGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45825467	mCV22340613	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					G		G
ss47667729	NES10246895	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	G		G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29529264					SNP	C	C	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667729	NES10246895	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31206552 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	within coordinates
Cpgi15696	CpG island 15696	325 bp distal
Rr112650	regulatory region 112650	1249 bp proximal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	453 bp downstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	284 bp upstream
Tssr45658	transcription start site region 45658	535 bp downstream
Tssr45659	transcription start site region 45659	174 bp downstream
Tssr50520	transcription start site region 50520	1341 bp upstream
Tssr50521	transcription start site region 50521	1322 bp upstream
Tssr50522	transcription start site region 50522	1199 bp upstream
Tssr50523	transcription start site region 50523	1170 bp upstream
Tssr50524	transcription start site region 50524	932 bp upstream