rs29529671 SNP Detail

Summary

• ID
  rs29529671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111886182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTATTAAA AAAATGCAAA
  TTGATAGAAA AAAAAAGAAA TCCTAAAAAT CTCTGACACT GAGTGAATGC ACACACCCAT
  GATCCCTTTC TGTCTAGAGA CAATGAGTGG ACGCACTCAC ATCTTACAAA AGTGACACCC
  TTTTTCACCT TCTCAAGTGT AATCACTCAC TGTTTTTGTT TTTCCTTTAC AGGGAGAGGG
  R
  GAAAAAAAAA GCCAAACATT TCTGTTAAAT ACAGTTAGTT CAGGCTTTAA GTATTTTACC
  CACGGTGCAA TGCCTGGTCC TGAGTTTGAC CACACAGAAT AAATTCCTTA TAAGGAGCAC
  AGAGAAGTCA AAAGGAGTGC ACTTAAAAAT GTGGGGAGTG GAGCAGGGCT TGGTGGGGCA
  CGCCTGTGAT TCCAGCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39083949	mCV24613940	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss145218864	ENSMUSSNP3927876	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29529671					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111886182 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Tssr124031	transcription start site region 124031	1421 bp upstream
Tssr124032	transcription start site region 124032	1210 bp upstream