rs29529678 SNP Detail

Summary

• ID
  rs29529678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24659811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGAAAGC CTCCCAGTGC CTTCTTTCAC CTTCGCTTCC
  CAGCCTCTCC TAGGAACTCA GTTTTTTTAC CCCCGCCCTA CAGGCTCCCA CACTTCTGTC
  R
  ACCCAACTTT TCCACTGTAG GCAGGCTAAA AATTAAAGTA AAATAAAAAA TAAGGAGCCT
  AACCAATCAG GCTCCTATTC CAGTGTTCAG CCCTGTGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45828433	mCV22698335	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148093846	ENSMUSSNP5636519	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29529678					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24659811 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3			Intron
				Noncoding-Transcript-Variant
Cpgi15603	CpG island 15603			1495 bp distal
Rr608325	regulatory region 608325			1699 bp distal
Rr608326	regulatory region 608326			1228 bp distal