rs29530635 SNP Detail

Summary

• ID
  rs29530635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30803599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGCATG ATATAATAAA
  TTAGAATTCA CTTTCTAATG TGACTCTAGA GACAAAGACT GCTCTGCTAG TGACATCATG
  TCGGGCTAGT GACACCAATG TCATTAGTAA TGTTTATGTC AGGCAAGTAT CCTTGGCCTG
  AACCTATGGG AAAATAGCCC AGAGTCCTAC TGTAGTCGAT AAGAACTGTC TCCCATGGGG
  R
  ATAGGGGTGG GGAGGCCTGG CAGATGGTGT CCCTTTAGGA CACAGTTGTG TTTCATCTAG
  TCTCCAATGT CTCAGGAAAC AGTTTTGGAT AAATTACTAC TTCCTTTGAA ATGACACAAA
  ACTAAAAGCA CTGTGGGGGA CACATAGCTC AGAAGTCACC TCTTGGATCT TTTATCCCTG
  GTTTCACTGA AAAGAGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45827939	mCV25292958	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss148186552	ENSMUSSNP1340192	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29530635					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30803599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1478 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	933 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1681 bp upstream
Rr609028	regulatory region 609028	1188 bp proximal
Slc35f6	solute carrier family 35, member F6	1678 bp upstream
Tssr45603	transcription start site region 45603	1666 bp upstream
Tssr45604	transcription start site region 45604	1680 bp upstream
Tssr45605	transcription start site region 45605	1750 bp upstream