rs29530686 SNP Detail

Summary

• ID
  rs29530686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113172200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACTCACTCG GAGATGGAGT GGAAACTGCA ACGCACCGCC CGGAGGAAGA TCCGGACGGA
  AGAAGAGATG TTGTGGGTGC GTACCATCCT TTTCTTTCTT GACCCAACCC TCCCATGGGG
  CTTCTTGCAG AAGGTACGGT TTGTAATACC CAGTAAGGAC CAAAAGATGC CATGAAATTC
  TACAGCCTAG TTTAAATTTT GAACGGTGTG AAATTTAAGT TCTGGAGATA CCTGGTCGCT
  TTAGAAAGAA TGAGTGAATC AGCAAACCCA GGATTCAAAA CAATTCCCCA CTCTCCGTGA
  Y
  GATTTTCCTA AAGAGTTTTC TCCCTTCTTA TGTTAATCTA TTTCCAAAGG AGAACATCAT
  GCGGGTGCTC GCCAACGGCA TGAAGCAGCA GCGAAATCAA GGTTCCCCCA AGGTGAGTTT
  TCTGGGCTTG CCCTTCTGTC TTCATTCTGA TCTCGAGCAA ATTAATTCTT GCTATAGAAG
  GCATTTGCAG GAATTATGGG AGAATTAATA CAAATTAAAA ACCTTTACAG AATCTGAAGA
  CTTAAGAAAT GGATTCTCAC AACTGATGTA GCTACTTATA CCTGCTTAGC GGGCGCTTCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39084353	mCV23842474	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29530686					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113172200 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	140 bp distal
Mir449a	microRNA 449a	1868 bp upstream
Mir449b	microRNA 449b	1753 bp upstream
Mir449c	microRNA 449c	317 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	317 bp proximal
Rr486471	regulatory region 486471	277 bp distal
Rr486472	regulatory region 486472	438 bp proximal
Tssr121165	transcription start site region 121165	435 bp downstream
Tssr121166	transcription start site region 121166	1944 bp upstream