rs29530999 SNP Detail

Summary

• ID
  rs29530999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64608589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA TAGTCTAAAC ACTTAATTAA
  Y
  TAATTAGTTA ATTCATTAAT TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39085145	mCV24904717	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss149175799	ENSMUSSNP4175251	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss324382295	CHEV_13_64562083	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29530999					SNP	C	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64608589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5783	CpG island 5783	1754 bp distal
Gm7712	predicted gene 7712	1987 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Rr481888	regulatory region 481888	1950 bp distal
Rr481889	regulatory region 481889	109 bp proximal