rs29531430 SNP Detail

Summary

• ID
  rs29531430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:45544869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AGACAAGGTA AAGCGAGGCC
  R
  AAACAAACCA ATGTCAAGTA CACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39081989	mCV22908446	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss148962704	ENSMUSSNP1499522	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss324332396	CHEV_13_45486762	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29531430					SNP	A	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45544869 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56579	predicted gene, 56579			418 bp upstream
Mylip	myosin regulatory light chain interacting protein			Intron
				mRNA-UTR
Rr403746	regulatory region 403746			1654 bp downstream
Rr478673	regulatory region 478673			1641 bp distal
Rr478674	regulatory region 478674			1860 bp distal
Rr478675	regulatory region 478675			456 bp distal
Rr478676	regulatory region 478676			within coordinates
Rr478677	regulatory region 478677			429 bp proximal
Tssr119571	transcription start site region 119571			1643 bp downstream
Tssr119572	transcription start site region 119572			371 bp upstream
Tssr119573	transcription start site region 119573			387 bp upstream