rs29531430 SNP Detail

Summary

• ID
  rs29531430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45544869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AGACAAGGTA AAGCGAGGCC
  R
  AAACAAACCA ATGTCAAGTA CACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39081989	mCV22908446	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss148962704	ENSMUSSNP1499522	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss324332396	CHEV_13_45486762	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29531430					SNP	A	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45544869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	823 bp distal
Gm56579	predicted gene, 56579	418 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	1654 bp downstream
Rr478673	regulatory region 478673	1641 bp distal
Rr478674	regulatory region 478674	1860 bp distal
Rr478675	regulatory region 478675	456 bp distal
Rr478676	regulatory region 478676	within coordinates
Rr478677	regulatory region 478677	429 bp proximal
Tssr119571	transcription start site region 119571	1643 bp downstream
Tssr119572	transcription start site region 119572	371 bp upstream
Tssr119573	transcription start site region 119573	387 bp upstream