rs29532387 SNP Detail

Summary

• ID
  rs29532387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13854340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATATTGC TTTATATCAA
  TTTACCAGTA AAGTCTATTT CACAAAAATT ATAAGAATCA TGTAGTTTAT TGGAATTCTT
  TCCTGCGGTG TAGTATCAAT TTTTGAACAT TTCAGTCTCA GCTCAGTTAT CTCCTTTTTA
  AAGAGGCCTC CCTGATTGCC ATGTCAGATT ACTTCCCTCT AGCCATACTC TTTATTTACG
  Y
  ATATATGTAT ATATTCATAT ATGTATATAT TCATATATTG TCATCTCTAA TGTAAACTTC
  AGCTATTTAC AGTTGTCCAT ATGTTGTACA TACTAAGTGT ACTGACAAAG CAATGAATAT
  TCAATGTGAA TAGCTTCCTT TAGAATCACC AATAGCATAG AGGTGCTAGT TAATTTCTTT
  ATGCAGGTAA CATGGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39083175	mCV22281266	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148688914	ENSMUSSNP1089905	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29532387					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13854340 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr270837	regulatory region 270837	1861 bp proximal
Rr282634	regulatory region 282634	1740 bp distal