rs29532885 SNP Detail

Summary

• ID
  rs29532885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96801875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA GCCCTCCCAC AGCTGCTGCG
  Y
  GACTCGTGAA ACGCATCTAC CCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39084075	mCV24346679	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss145024463	ENSMUSSNP5423580	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss324494667	CHEV_13_97435322	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29532885					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96801875 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	1325 bp proximal
Rr281795	regulatory region 281795	1725 bp proximal
Rr285480	regulatory region 285480	298 bp distal
Rr285481	regulatory region 285481	126 bp proximal
Tssr123569	transcription start site region 123569	1342 bp downstream