rs29533089 SNP Detail

Summary

• ID
  rs29533089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75700842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT GTTTCCATAT GGGGAAGAGT
  W
  AGGTCTAAGA GGTAGAGGAG CTTGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39582225	mCV23506436	ABI	CRAMUS_MOUSE	f	SNP		A					T		A
ss62907392	NES17398008	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T	A		T	A	T	T		T	T	T	T		T
ss145963275	ENSMUSSNP5200135	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss325451900	CHEV_17_75793187	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29533089					SNP	T	A	A	T	T	A	T	T	A	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62907392	NES17398008	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75700842 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	1335 bp downstream
Rr392951	regulatory region 392951	within coordinates
Rr531033	regulatory region 531033	1388 bp distal