rs29533113 SNP Detail

Summary

• ID
  rs29533113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100912255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCGGCT CTCTTCCCCA
  CTGACAGGCC TAAAGCGGTG AAACTGATGG TGCCGCAAGC TTCGGAGCCC TAAATCAGCC
  AGGGAACCTG AATAGGAACC CTGAGCCTCC CGAGTGGGGG CGGATGCCCG CCGGGAGCAC
  CTGAGCAGCA GGCTGATACG GTCCTCGATA CGCTCCTCCG CGGCCTGCGA CAGACCCCGC
  Y
  TCTCTTCGCA GGCCTCAGCC CCGGCCTCAG ACCTCTCCCG CGGCTGCTCC TCCATTGCAA
  AGGCCCGCAG GTTTGAACGC CACAGAAAAT AACCCAGCAG TTCTTCCCGC CACGAAATTG
  GTTTCCGGAA GTTCCTACCC TTCCGGAAGG GTCCCGCCCC TTCCGCCCTG AGTCCCTCCT
  TCTGCTTCTC CCCTTGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39085450	mCV23726394	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145091315	ENSMUSSNP6306598	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29533113					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100912255 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Cpgi6041	CpG island 6041	within coordinates
Rr280869	regulatory region 280869	within coordinates
Tssr123809	transcription start site region 123809	56 bp downstream
Tssr123810	transcription start site region 123810	97 bp downstream