rs29533616 SNP Detail

Summary

• ID
  rs29533616
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77193877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT AAAATTAACA CAAACAAAAC
  S
  AATAGTCACA CAAATGTTTA TGTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39082393	mCV24822295	ABI	CRAMUS_MOUSE	f	SNP		G	G		C		G
ss49119532	NES12425964	PERLEGEN	MM_PANEL2	f	SNP	G		G	G		C		G	G		C	G	G	C
ss144698268	ENSMUSSNP2006398	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss324446863	CHEV_13_77185019	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29533616					SNP	G	G	G	G	C	C	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119532	NES12425964	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77193877 () rs orientation: forward

Symbol	Name	Function Class
D13Mit231	DNA segment, Chr 13, Massachusetts Institute of Technology 231	1985 bp proximal
Rr273760	regulatory region 273760	77 bp distal
Rr277223	regulatory region 277223	1677 bp distal
Rr281681	regulatory region 281681	923 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123272	transcription start site region 123272	1647 bp downstream
Tssr123273	transcription start site region 123273	1867 bp downstream