rs29533777 SNP Detail

Summary

• ID
  rs29533777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49013521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGATGCAT GTACACATAT AATGAGATCA GAGGTTGATA
  TTGAGTGTCT TCCACATACT ATCTACCTTA TATATTGAGT CAAGGTCTCT CACTTGAATC
  Y
  AGACCTCAAA AACTTTGCTA GTCAAGCCTG CCAGCTTGTT CAAGGTAGGG CTTCTATCTT
  AGGGTTTTAC TACTCTGAAC AGGCACCATG ACCAAGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss39582324	mCV23308578	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145722420	ENSMUSSNP4216954	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325410153	CHEV_17_48845818	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs29533777					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49013521 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	63 bp distal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	45 bp distal
Rr392702	regulatory region 392702	461 bp upstream