rs29534780 SNP Detail

Summary

• ID
  rs29534780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:115665896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAACGACTG GTTAACCCTT TGTACCCTTT GCCTTTTGTC ACGCCGATGA CATCAATCAC
  CTCATCCTGC CCAAACACCT GGTTCACAGG AACCTGCTGC TCCAGCCTCT CTCAGGCCCA
  GTCGAGCTTC TCAGCCACAG TGCCCCCATT CACCTGGATC TCCATCAAGT GTGCCTTCTT
  CTGGCGCAGA GGAAGCAGAC GCATCTGAGT GTGGGCAATG ATGCGGATGA CCTGGCAGTA
  CTTCTTCATG CTGTTGAAGT CCTTCTCCAG CTGCTTCTTG CCTGTGTCAT CCTGCCATTT
  Y
  TTACAGTACT TGGTGAAAGC CTTCTTCTTA GACTTGTGCC AGTTCTTATA GAAGCGCCTT
  TTACACTCAT CGCTGATGTG CTCAGCAAAT ACAGTCTTGA AGGTCCGGAG GCCTCGTGGG
  GTCTCAACAT ATCCCACAAT GCCCACAACC ATCACTGGGT GGGGGTGGGG GGTTCCACAA
  TGGTCACAGC CTCCACGACT TCTTTCTTGT TCACCTTAGA TCCTGGCCTG TCAACTTCCC
  GGACGATGTG GGTCATGCCA GCCTTGTAAC CCAGAAAGGC TGTGAGGTGA ACAGGCTTGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39083309	mCV25027812	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29534780					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:115665896 () rs orientation: forward

Symbol	Name	Function Class
Gm6035	predicted gene 6035	within coordinates
Tssr124162	transcription start site region 124162	433 bp downstream