rs29536220 SNP Detail

Summary

• ID
  rs29536220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81007917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGTTTGG TTCCAGCACC
  CACACTGCAG CTCATCATCG TCTGTAAGTC TAGTTCCAGG AGACCTGATG ACCCCAGGTT
  GTCTTCCAGG GGAACCTGCG CACACACGGT GCATAGATAC ACATGCAGCC AAAACATTCA
  TACAACATAA AATAAACTGA AAGCAAAATA TATCCATCAC ATGACCCAAA CATGCCATTC
  Y
  TGGTATTTTG TGAAAGGACT CCAAGTCAAC ACATCAGGAA CTCATTAGGT GTCTAACAAC
  AGAGGAACGG GTAAAGAATT GTTTATAAAA GAATGTGTGT GTGTGTGTGT AGAAAACAAA
  AATGAGGTCG AAGTATCTAG CAGAACAAAA GGAATAATTG AGAGGGGTGA GAAAAGGGAG
  GGAGAGGAAG GGATATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39583247	mCV22619853	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146075166	ENSMUSSNP6668980	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29536220					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81007917 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	1284 bp proximal
Tssr149503	transcription start site region 149503	263 bp downstream
Tssr149504	transcription start site region 149504	1519 bp downstream