rs29537068 SNP Detail

Summary

• ID
  rs29537068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5937492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTACAGGCA AGCTAAGATG TTGAGATCTG TTTTGGACTT AACATTTGTA ACGTCCTCTT
  TTCCTGCCCA CTTCCTGCAG GCTCGGGTCA TGTACGACTT TGCTGCTGAG CCTGGAAACA
  ATGAGCTGAC CGTTACTGAA GGAGAAATCA TCACAGTTAC AAACCCGGTA AGAGCGGGCG
  AGCGTACAGT GCTGTGGATG TGCGTTCATG TGGTGCCTTT CTTCTACATG CTCAGCAGCT
  CACATCGGTG TTTCAGCTGG TGCTTATGAA ATGCTGATGC TACAAGAAGC TGTCACATGC
  R
  CACCTAGAGA AGTTCAGCCC CTGCATGTGG CTGAGTGTGT GACTAAATTT ATTGCGCCTC
  TTTTTTGCTG GTGTTCCCTA ACATTTGTAG CCTGCCAAGC ATCTGTTGTG GTTCTGAAAT
  CAACTCCCAG TGGTTTGTCC CTACGCTACA GGGCTGAGTC TCTGTAATAC ATAGGCAGTC
  ATGCCGACGG TCCTAAACAG CTTAGTTTCT GATTGCTCTC TCTGTTCTTA GCCTGACCCT
  GTAGTAGGAT TACCAGAAAG CAGTGTGTGT TAGCTTAGCT CCCAGCAGGG CCACAACACC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39582764	mCV23634285	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss60525970	NES16545819	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29537068					SNP	G	G	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525970	NES16545819	PERLEGEN	MM_PANEL	f	SNP	A/G
ss145079314	ENSMUSSNP6904121	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5937492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	56 bp distal
Rr332307	regulatory region 332307	1292 bp distal
Rr332309	regulatory region 332309	309 bp proximal
Rr335511	regulatory region 335511	909 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	1509 bp downstream
Snx9	sorting nexin 9	within coordinates