rs29537087 SNP Detail

Summary

• ID
  rs29537087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173918566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGGAGA GTTAACCCAA
  ACTCGGAGTT AGAGCCACAT GCCGGGCACG CAGGCGCTCT GAGTTAGGGT TAGGGCGCCA
  GCACCTTTGG GGAGGTCTTA GGAAGTGAGT GGGTAGGGGT CTCTCCCATC CCCGAGCCGG
  ATTGGCGCGT CAGGCGCTTG TGGATCCGAG CTGGGATTGG GGAGGGGTCT CCAGGACGTT
  Y
  GATTTCGACG CTAGGATTGG GGGGATTCGA GTGCTTTGAG ATCCGAGCCA GCCTTGGGGT
  AGGGGGAGTC AGGCAGTTGG AAAAGGCGAG GTGGTTATTT GGGGAGGGGT CTCCGCGCTT
  AGGCGGATTG CAAAATCGCG CCGTGAAAAG CCTAAGGCTT TGTCAAGAGA GATTTCTGTG
  CAAGAGTGGA ATCAGCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45331989	mCV24858248	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148339428	ENSMUSSNP4502504	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320626945	CHEV_2_173902274	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29537087					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173918566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	1469 bp distal
Cpgi12852	CpG island 12852	within coordinates
D130084N16Rik	RIKEN cDNA D130084N16 gene	700 bp upstream
Gm75644	predicted gene, 75644	1819 bp upstream
Rr397552	regulatory region 397552	604 bp upstream
Rr572061	regulatory region 572061	1830 bp distal
Rr572062	regulatory region 572062	1329 bp distal
Rr572063	regulatory region 572063	506 bp distal
Rr572064	regulatory region 572064	within coordinates
Rr572065	regulatory region 572065	160 bp proximal
Rr572066	regulatory region 572066	1380 bp proximal
Stx16	syntaxin 16	within coordinates
Tssr22077	transcription start site region 22077	417 bp downstream
Tssr22078	transcription start site region 22078	272 bp upstream