rs29537297 SNP Detail

Summary

• ID
  rs29537297
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84765106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGACAG CTCCTATAAC
  TAAGGTGCTT TGAACCCGTT TTAGTGGGGC AGCTAGTGGG TCTGTGGTCT CTCCCTCTGC
  AGTAAGTCAC TTGAATAGTC TTTTTTGATA CTTTGTTTGG GTGGTGATCG GGACCTCACT
  TCCTGGTGCT TGCCTTCCCA CCATCTCCCT GTAGAAAGAG GGCCGAGCCA GGAAGCTGGG
  M
  ATCTAATGCA AAAAGGCAGC TCTCTCTCCA AGGAGAACTG TGGTTCAGGC AAGGAAGACA
  TTGGCTCATT TGCTCTGGGC TGGAGAGCAG CACAGCTGGT TAGGCCAGCT ATTTCATGCT
  GATCACAAGC TCCGATGGGC AATTATAAAT GTCTTTGATT AATAAAAAAT GGGATGGTGA
  ATGAATAGTT AATCAATGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45332688	mCV23822632	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss146835514	ENSMUSSNP3203573	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29537297					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84765106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	1854 bp proximal
Rr57133	regulatory region 57133	694 bp proximal
Rr57134	regulatory region 57134	1694 bp proximal
Slc43a3	solute carrier family 43, member 3	1837 bp upstream
Tssr18709	transcription start site region 18709	1821 bp upstream
Tssr18710	transcription start site region 18710	1849 bp upstream