rs29538383 SNP Detail

Summary

• ID
  rs29538383
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24034352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC ATCCCCTCAA CCTACCAAAG
  K
  TTCTCGGCAT GCCAGCTCTT CTCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39582881	mCV22837872	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss145333357	ENSMUSSNP4643642	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss325327506	CHEV_17_23952345	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29538383					SNP	T	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24034352 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	1878 bp upstream
Rr340683	regulatory region 340683	249 bp proximal
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142964	transcription start site region 142964	1912 bp downstream
Tssr142965	transcription start site region 142965	187 bp downstream
Tssr142966	transcription start site region 142966	140 bp downstream
Tssr142967	transcription start site region 142967	94 bp downstream
Tssr142968	transcription start site region 142968	73 bp downstream
Tssr142969	transcription start site region 142969	677 bp upstream
Tssr142970	transcription start site region 142970	706 bp upstream
Tssr142971	transcription start site region 142971	774 bp upstream
Tssr142972	transcription start site region 142972	819 bp upstream
Tssr142973	transcription start site region 142973	833 bp upstream
Tssr142974	transcription start site region 142974	870 bp upstream
Tssr142975	transcription start site region 142975	894 bp upstream
Tssr142976	transcription start site region 142976	922 bp upstream
Tssr142977	transcription start site region 142977	980 bp upstream
Tssr142978	transcription start site region 142978	1025 bp upstream
Tssr146670	transcription start site region 146670	108 bp upstream