rs29538842 SNP Detail

Summary

• ID
  rs29538842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66078452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA TCCGACTTCC ATCAAAGGAT
  Y
  CGGCGGGGCC CAGGTGAAAC CACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39581115	mCV24592625	ABI	CRAMUS_MOUSE	f	SNP		C		T		C
ss62850173	NES17384866	PERLEGEN	MM_PANEL2	f	SNP	T		T		C	C		C	C	C		T
ss145840835	ENSMUSSNP2925407	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss325428004	CHEV_17_66120797	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29538842					SNP	T	C	T	T	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850173	NES17384866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66078452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	518 bp proximal
Rab31	RAB31, member RAS oncogene family	within coordinates
Tssr149074	transcription start site region 149074	1178 bp downstream
Tssr149075	transcription start site region 149075	1208 bp downstream
Tssr149076	transcription start site region 149076	1229 bp downstream