rs29538905 SNP Detail

Summary

• ID
  rs29538905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24907592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA CATGGTGTCA AGGAGCCTAG
  Y
  TTGGAATGCT GGGTCCAAGA ATGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39582694	mCV24347413	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145361346	ENSMUSSNP5456474	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325333035	CHEV_17_24825563	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29538905					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24907592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8736	CpG island 8736	1811 bp distal
Cpgi8737	CpG island 8737	747 bp distal
Cpgi8738	CpG island 8738	887 bp proximal
Rr339324	regulatory region 339324	1791 bp distal
Rr339325	regulatory region 339325	within coordinates
Rr405090	regulatory region 405090	1478 bp downstream
Syngr3	synaptogyrin 3	within coordinates
Tssr146762	transcription start site region 146762	1262 bp downstream
Tssr146763	transcription start site region 146763	1283 bp downstream