rs29539236 SNP Detail

Summary

• ID
  rs29539236
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCTGGGG TTGATAGACT
  AAAGCCAACC ACCATGCCCA GCTTTGCAGG AACTTTGAAC AGCAGGAATA CATGCATGCA
  TACATACATA CACACATATA CATACATGCA CACCTTGTAA GAATGGGCTT GTACAGGAAG
  TGGAGAGTCG CTTAACTGTC CCCTACATAA CAGCCAGGTG AATAAAATGA AAGTGAGCTG
  K
  GACCTGCTGC TGTAATCCCA GCACTCGGGA GGCTGAAGCA AGGGGGTAGT AAATTGGAGG
  CTAGCCTGAA CTACATAGCA AGACATTCTC AAGCAACAAC AGCAACATCA AAAACCTGTA
  CCCTCAGAAT AAGCACAGCC ACATGCCTGT AAGACACGCT CCTGAGTTGC AACAGCCCTA
  GGAAGGGTTG CAGACGTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45330234	mCV22943474	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss148265671	ENSMUSSNP1173623	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29539236					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	559 bp distal
Gm57439	predicted gene, 57439	1042 bp upstream
Rr406967	regulatory region 406967	599 bp distal
Rr570860	regulatory region 570860	1113 bp distal
Rr570861	regulatory region 570861	1256 bp distal
Rr570862	regulatory region 570862	554 bp distal
Rr570863	regulatory region 570863	1308 bp proximal
Rr570864	regulatory region 570864	1405 bp proximal
Tssr27820	transcription start site region 27820	1388 bp upstream
Tssr27821	transcription start site region 27821	1105 bp upstream
Tssr27822	transcription start site region 27822	1069 bp upstream
Tssr27823	transcription start site region 27823	1041 bp upstream
Tssr27824	transcription start site region 27824	477 bp downstream