rs29540244 SNP Detail

Summary

• ID
  rs29540244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115116494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTTGTTT GTTTTCTTGT TGTTATTTTG TTTTGTTGTT
  TTTTGCAAGG CATCCAGACA GGTGTGTCTG TGTTACCGGC TAGATCTCTC TAAGATCCTT
  Y
  TAGGATCCAT GGTTCGGGAA CTTCACCTTT CCAGGGTCTC CACAGACATA GTAAATGTTA
  AAAAAAACAG CTGTGCAGGT TTAATCCCAA ACGCTGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45829785	mCV24915494	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss149119820	ENSMUSSNP4546634	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321653996	CHEV_5_115428444	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29540244					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115116494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16346	CpG island 16346	815 bp proximal
Gm71622	predicted gene, 71622	within coordinates
Gm71625	predicted gene, 71625	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	within coordinates
Rr618085	regulatory region 618085	466 bp proximal
Rr618086	regulatory region 618086	572 bp proximal
Rr618087	regulatory region 618087	954 bp proximal
Rr618088	regulatory region 618088	1983 bp proximal