rs29540294 SNP Detail

Summary

• ID
  rs29540294
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120952513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTCATG AAACTAGCCA
  CACCCTTCAC CCAAGATGAG CTTCCGTACC CCTGCAGTTG ACGCTTGGGT TCTATTCTGA
  AGAAGTTTCC TTCCTCATGT GGGCCTGCAC CTATCCTGTC TTTGACCTAT GATGTTAATT
  TGAACACCCT AGGTCTTCAA GCTTGCTTTA ATCATCAGTA CCCAAGGATA ATAGCTGTGG
  N
  TAGTGTAGCC CCACTATCCT CTTCCCTGTT TATTTTTTCT ACTGGATTTA AAGGCATGGT
  CTCTCTATGT AGCCCAGGTT GGCCTCCAAC TCGTAAATCC TCCTCAGTTA CTGATTTGAA
  TGCTGGAATT GTAGACGTTC ACCATGCTAA GGGCATTGTT TTGCCCTTTG AAAATGACGG
  AGTTTTAAAA CCCAGGATAG                                            
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45226166	mCV22579512	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss45307222	mCV22579519	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss45332420	mCV22579520	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29540294					SNP	?	A	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120952513 () rs orientation: forward

Symbol	Name	Function Class
D2Ertd616e	DNA segment, Chr 2, ERATO Doi 616, expressed	523 bp distal