rs29540522 SNP Detail

Summary

• ID
  rs29540522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109747482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGGACT CCTCAACATC
  CTTGTGTTTA GGGAGAAAGA AGTCTGATTG GTGTCATGGA TGATTAACCG CTAATTTAGC
  TCCCAAGTGT GAATGAAAAA GGGTACTAAG ATCTCAGAGG TGATGTGAGA TACAGGAGGG
  GTCACGCTGT TTTAATTTAG TGCACGGTTG AACTCAAAAA TTTGGATCAG ATAGAAAGAA
  R
  TGTTTCTCCC TCCTTTTCGA CCCCCACCCC CACCCCCATT TCTTTCCTCT GTTTGCAAAG
  CTCTCAGTGC CCTTGCCCTT AAGAACAGCG AAGAGTCATT TGACACGTCT GAAAGCTGGA
  GGCGAGTTTT ACTTTTCAGG TCATCCAATT TAGGAGATCC AATTTCTGCG GAGGGGAGAA
  AAAAACTGGG TGGGGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45329671	mCV23138121	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147206164	ENSMUSSNP1455839	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29540522					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109747482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	331 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	510 bp upstream
Rr397176	regulatory region 397176	221 bp upstream
Rr562509	regulatory region 562509	20 bp proximal
Rr562510	regulatory region 562510	521 bp proximal
Rr562511	regulatory region 562511	626 bp proximal
Rr562512	regulatory region 562512	665 bp proximal
Rr562513	regulatory region 562513	1053 bp proximal
Tssr19307	transcription start site region 19307	434 bp upstream
Tssr19308	transcription start site region 19308	459 bp upstream
Tssr19309	transcription start site region 19309	502 bp upstream
Tssr19310	transcription start site region 19310	542 bp upstream
Tssr19311	transcription start site region 19311	586 bp upstream