rs29540673 SNP Detail

Summary

• ID
  rs29540673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46037135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGAGGGG GTGTCTCAGG GATACCACTC TGGACAGTAA
  AGAATGACTC TGGTCCCCAG CCTTGGGCTT TGGGGAGGGG GCGGCTAGCT GTTGATTTGG
  Y
  GCCCTGCACC TGTGCAGAAC CCAGCTCCCA TGTCTTGTGC CTGCTCGCCC GCCCTGGCAG
  GCCCCACGCC TGGTCCAGGG GACTTTTATG GGCTCTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39583306	mCV24294372	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss60259591	NES15753060	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	T		C	C	T	C		C	C	C	C		C
ss145695443	ENSMUSSNP5328891	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss325403925	CHEV_17_45863158	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29540673					SNP	C	C	C	T	T	C	T	T	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259591	NES15753060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46037135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9206	CpG island 9206	1769 bp distal
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	1335 bp distal
Rr331487	regulatory region 331487	666 bp proximal
Rr339880	regulatory region 339880	1534 bp distal
Rr339881	regulatory region 339881	within coordinates