rs29540721 SNP Detail

Summary

• ID
  rs29540721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144111934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAGTTGCA AAAACCATGC TACATACAGA TACTCGTTAG
  AAATCTCCCC ACTATTTTAA ACGAAAAGGC CATTTTCTTA AAAGGAGATA GGAATAGCAA
  R
  CGAAACTTTG ATCCACTTTC CAATTACCAT GTAGTCGATT TAAGTTTTAG GAGCAAAAGA
  AAAAAGAAAA AAAAAAAAAC CACGCTCCTA AGGGCTTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45333395	mCV22516069	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss147789052	ENSMUSSNP4686172	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29540721					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144111934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			102 bp proximal
Mgme1	mitochondrial genome maintenance exonuclease 1			890 bp upstream
Rr397362	regulatory region 397362			737 bp upstream
Rr397363	regulatory region 397363			1402 bp upstream
Rr566423	regulatory region 566423			1823 bp distal
Rr566424	regulatory region 566424			502 bp distal
Rr566425	regulatory region 566425			within coordinates
Rr566426	regulatory region 566426			548 bp proximal
Rr566427	regulatory region 566427			938 bp proximal
Snx5	sorting nexin 5			Intron
				Noncoding-Transcript-Variant
Tssr20524	transcription start site region 20524			560 bp upstream
Tssr20525	transcription start site region 20525			608 bp upstream
Tssr20526	transcription start site region 20526			864 bp upstream
Tssr20527	transcription start site region 20527			997 bp upstream
Tssr20528	transcription start site region 20528			1614 bp upstream
Tssr26594	transcription start site region 26594			52 bp downstream
Tssr26595	transcription start site region 26595			426 bp downstream
Tssr26596	transcription start site region 26596			490 bp downstream
Tssr26597	transcription start site region 26597			766 bp downstream
Tssr26598	transcription start site region 26598			822 bp downstream
Tssr26599	transcription start site region 26599			838 bp downstream