rs29541393 SNP Detail

Summary

• ID
  rs29541393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73143291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT GAGGCGTCTC CTTTAAGAAG
  Y
  TGACTCACGT GGATGCTGTG TTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39583412	mCV23494926	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss145925133	ENSMUSSNP3220393	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325448127	CHEV_17_73185636	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29541393					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73143291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr335920	regulatory region 335920	1291 bp distal
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	within coordinates
Tssr5197	transcription start site region 5197	141 bp upstream
Tssr145775	transcription start site region 145775	360 bp upstream
Tssr145776	transcription start site region 145776	382 bp upstream
Tssr145777	transcription start site region 145777	428 bp upstream
Tssr145778	transcription start site region 145778	1257 bp upstream
Tssr145779	transcription start site region 145779	1328 bp upstream
Tssr145780	transcription start site region 145780	1748 bp upstream
Tssr149306	transcription start site region 149306	1173 bp downstream
Ypel5	yippee like 5	332 bp upstream