rs29541675 SNP Detail

Summary

• ID
  rs29541675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90375142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TCCAGATCCC ACATTTAAAA
  R
  GGGGGCGGGG GGTACACAGC ACACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45329974	mCV24351476	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss146920524	ENSMUSSNP6544218	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320390969	CHEV_2_90384955	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29541675					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90375142 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	1814 bp downstream
Rr560526	regulatory region 560526	1255 bp distal
Rr560527	regulatory region 560527	687 bp distal
Rr560528	regulatory region 560528	466 bp proximal
Tssr25105	transcription start site region 25105	1970 bp upstream