rs29542188 SNP Detail

Summary

• ID
  rs29542188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32901872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TACTTCAACA ATAATGCTCC
  Y
  ATCTTCCCCA GGCCACCAGA CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45830789	mCV22741277	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss148203939	ENSMUSSNP3368360	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss321505770	CHEV_5_33087176	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29542188					SNP	T	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32901872 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	1956 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Tssr45794	transcription start site region 45794	1591 bp upstream
Tssr45795	transcription start site region 45795	1993 bp upstream
Tssr50589	transcription start site region 50589	1744 bp downstream
Tssr50590	transcription start site region 50590	1789 bp downstream
Tssr50591	transcription start site region 50591	1815 bp downstream