rs29542215 SNP Detail

Summary

• ID
  rs29542215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129917892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CGGTTTTTGC CTTTATAAAC
  Y
  CCTAAACCCC TCACCCCTTG AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45830986	mCV25038606	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss144477421	ENSMUSSNP1399489	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss321692423	CHEV_5_130364921	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29542215					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129917892 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	1581 bp upstream
Cpgi16684	CpG island 16684	1430 bp distal
Gm72701	predicted gene, 72701	1803 bp downstream
Rr399383	regulatory region 399383	1542 bp downstream
Tssr53498	transcription start site region 53498	1894 bp upstream
Tssr53499	transcription start site region 53499	1746 bp upstream
Tssr53500	transcription start site region 53500	1622 bp upstream
Tssr53501	transcription start site region 53501	1571 bp upstream