rs29542274 SNP Detail

Summary

• ID
  rs29542274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97204111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATATGT AATTTTCAGA
  TTATATTGGT CCCACACTCA TGCACATACT GGCAGTACTA AATGGACTGA GTGGGTATCA
  AAAACAAACA AACAAACAAA AGATCTCATG AAGTTGTGAG GGGCAAGTTT TGAGGGAAAT
  AAGGAGGAAG TTGGAGGGGA GAGATTTGGG GATTGGATTT GTTTCAGATA CATTGTGTGC
  R
  TGTATGAATG CTAAAAATAA ATTTACCTAT TTTTATTGTT GTTTTGAAAT GTCACTTATG
  TCTGCTAATC CTTGTTTTCA AAATTGTGCT TGCTGTTCTG CTGTGTGCAT TTGGGGCTTA
  TGCGGAGTCC CAGTCAGACA TTTCTCCTGA TTGCCATTCA GTGTTCTAGG ACAACAAAGG
  TTGGGTGAGC AGGCAGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45830495	mCV25011124	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss148886298	ENSMUSSNP4845542	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29542274					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97204111 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	231 bp downstream
Rr615014	regulatory region 615014	260 bp distal
Rr615015	regulatory region 615015	376 bp distal