rs29542286 SNP Detail

Summary

• ID
  rs29542286
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48038141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT ACACAGGTTA TAAGGAATAC
  K
  CATGGATTTG AGCATCTGTA GATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39583709	mCV25139983	ABI	CRAMUS_MOUSE	f	SNP	T	G			T		G
ss48365362	NES12216403	PERLEGEN	MM_PANEL2	f	SNP		G	G	T		T	G	T		T	T	T		T
ss145708955	ENSMUSSNP3336598	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G					G
ss325406537	CHEV_17_47864165	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29542286					SNP	T	G	G	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365362	NES12216403	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48038141 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	within coordinates
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	1534 bp upstream
Tssr145003	transcription start site region 145003	368 bp downstream
Tssr145004	transcription start site region 145004	1516 bp upstream
Tssr145005	transcription start site region 145005	1544 bp upstream
Tssr145006	transcription start site region 145006	1553 bp upstream
Tssr145007	transcription start site region 145007	1580 bp upstream
Tssr145008	transcription start site region 145008	1614 bp upstream
Tssr145009	transcription start site region 145009	1631 bp upstream
Tssr148459	transcription start site region 148459	1580 bp downstream
Tssr148460	transcription start site region 148460	1601 bp downstream
Tssr148461	transcription start site region 148461	1640 bp downstream
Tssr148462	transcription start site region 148462	1659 bp downstream