rs29542346 SNP Detail

Summary

• ID
  rs29542346
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93988210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAAGG GCCACAGCGT
  GGTCGCGGCT TGTGGTTCCA CTCACCTGCC CATTCTCCGA GTCGCGGACC GACCAAGGCC
  TCGTTGCCCA CGCACCACAC CTGGAAGGCC CTGAAGAGCG AGTACGAGGC TCGCAGGGCC
  AGGTAGGCAA TGGTGCTCGC GCCCACCCAG TACAGGAAGC CGGCCGCCGG GGGAGCGCAC
  W
  CCATGGCTCG TGACTAGGCC TCACTACTAC GGTGAATGGG GAAGGAAAAA AAAAAAAAGA
  ATGAATGGGA CGAGGAGGCG GTGCCGCCGT GACGGCGAAG ACGCAGCGAA TAGACGTGAT
  TTTTTGAACG CTTTAGGTCT AAGACCCGCC TACATAGTCA TATCCATGTG TCTATTGGTG
  ACTTCTCTTT CCTGTAAGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45331858	mCV25041681	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss146951416	ENSMUSSNP4316376	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29542346					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93988210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	within coordinates
Gm39885	predicted gene, 39885	487 bp upstream
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	within coordinates
Rr57226	regulatory region 57226	within coordinates
Rr367242	regulatory region 367242	288 bp upstream
Tssr25318	transcription start site region 25318	1672 bp upstream
Tssr25319	transcription start site region 25319	16 bp downstream