rs29542346 SNP Detail

Summary

• ID
  rs29542346
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93988210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAAGG GCCACAGCGT
  GGTCGCGGCT TGTGGTTCCA CTCACCTGCC CATTCTCCGA GTCGCGGACC GACCAAGGCC
  TCGTTGCCCA CGCACCACAC CTGGAAGGCC CTGAAGAGCG AGTACGAGGC TCGCAGGGCC
  AGGTAGGCAA TGGTGCTCGC GCCCACCCAG TACAGGAAGC CGGCCGCCGG GGGAGCGCAC
  W
  CCATGGCTCG TGACTAGGCC TCACTACTAC GGTGAATGGG GAAGGAAAAA AAAAAAAAGA
  ATGAATGGGA CGAGGAGGCG GTGCCGCCGT GACGGCGAAG ACGCAGCGAA TAGACGTGAT
  TTTTTGAACG CTTTAGGTCT AAGACCCGCC TACATAGTCA TATCCATGTG TCTATTGGTG
  ACTTCTCTTT CCTGTAAGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45331858	mCV25041681	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss146951416	ENSMUSSNP4316376	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29542346					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93988210 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm39885	predicted gene, 39885			487 bp upstream
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr367242	regulatory region 367242			288 bp upstream
Rr561341	regulatory region 561341			89 bp proximal
Rr561342	regulatory region 561342			202 bp proximal
Rr561343	regulatory region 561343			498 bp proximal
Tssr25318	transcription start site region 25318			1672 bp upstream
Tssr25319	transcription start site region 25319			16 bp downstream