rs29542570 SNP Detail

Summary

• ID
  rs29542570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155429598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG ACCTGCCCAG TTAGTTACCA
  Y
  GGAGGGGCAA CTGTGGGAGG AGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45329884	mCV22922108	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148055338	ENSMUSSNP4442457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320574369	CHEV_2_155413414	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29542570					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155429598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr374116	regulatory region 374116			1858 bp upstream
Rr568069	regulatory region 568069			1754 bp distal
Rr568070	regulatory region 568070			1188 bp distal
Rr568071	regulatory region 568071			1876 bp proximal