rs29543240 SNP Detail

Summary

• ID
  rs29543240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73948904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTATCCC GATCACCGGC CAGGTCCGCA GGGCGTTCAC
  GCGAGAAGAC GTTGTGCGCA GGCGCGGCGC TGGGTCGGCG GGTACCAATC TCCCAGTCCA
  R
  CAGACAGGAG AAAATAATGG TGTGGGTTCT CGTGGACCGC CGGTGGAGGA GGGAAGAAGC
  GGACGACGCA GGAGAGTAGA GACCACAAGA AACCCTAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39584607	mCV23372409	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147453874	ENSMUSSNP689882	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325684970	CHEV_18_73975487	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29543240					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73948904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	within coordinates
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	132 bp downstream
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	384 bp upstream
Rr405736	regulatory region 405736	103 bp downstream
Tssr153885	transcription start site region 153885	380 bp upstream
Tssr153886	transcription start site region 153886	347 bp upstream
Tssr153887	transcription start site region 153887	119 bp upstream
Tssr153888	transcription start site region 153888	39 bp upstream
Tssr153889	transcription start site region 153889	670 bp downstream