rs29543335 SNP Detail

Summary

• ID
  rs29543335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127856894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCTGAGC AAACCAAGAG GAGCAAGCCT TTAAGCAATG
  TTCCTTCATG ATCTCTGCAT CAGTTCCTGC CTCTTAGTCC TGCCCTGACT TACTTTCCTT
  Y
  GTGATGGAAA GTAAAGCTGT AAAGAAGAAA AAAAATCAGC CCTTTCTTCC CCACATTGTT
  TTTGCTAATG ATGTTTATCA CAGCAGTAGA AAATAAGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45331076	mCV22732960	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147549442	ENSMUSSNP5589389	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29543335					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127856894 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	54 bp downstream
Rr564632	regulatory region 564632	77 bp distal
Tssr20037	transcription start site region 20037	209 bp upstream