rs29543607 SNP Detail

Summary

• ID
  rs29543607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18002525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTCAT AGGAAAAATT
  GTCAATGTTG TTTTTACACT TTAAGAAATA ACATGGTTAA AAGCCTGGGT ATAAAATATA
  CATTCTTTGG TTCTTTAAAA TATCTTCTAA GGTCAAGTTT ACATGTAAAC TTTCATGGGG
  GATAAATGTC AAAGAAGGGT TTTATACTAA AATTCTTCTA ACAAATATTT ATATGTCTTA
  Y
  TCAAATTATA TACTTGTGCT CAATTTAGAA TTTTCCATCT TTCAAACATG CTTAAAAAAA
  GAGCTACTCA CTTGCTGGAA TATGTACATG GTGGGCTTGG AGCAGATCTC TGTCATTTAT
  CATGTCTACC ATGCACAATT CTTTGTGTCA AAGCTCATTC AATATTCTCT CTGATCCACA
  GCTACCCTTA TGTGACAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45830120	mCV23268449	ABI	CRAMUS_MOUSE	f	SNP	C	T			T	T
ss51687554	NES14753961	PERLEGEN	MM_PANEL2	f	SNP		T	T	C			T	T	C	T	C	T
ss147966733	ENSMUSSNP1275338	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29543607					SNP	C	T	T	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687554	NES14753961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18002525 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50147	transcription start site region 50147	1945 bp upstream
Tssr50148	transcription start site region 50148	1919 bp upstream
Tssr50149	transcription start site region 50149	1871 bp upstream
Tssr50150	transcription start site region 50150	1845 bp upstream
Tssr50151	transcription start site region 50151	1826 bp upstream
Tssr50152	transcription start site region 50152	527 bp upstream
Tssr50153	transcription start site region 50153	459 bp upstream
Tssr50154	transcription start site region 50154	332 bp upstream