rs29543857 SNP Detail

Summary

• ID
  rs29543857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144178947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GACACCACAG GACAGCTTCC GCAGTTGGTA GTCTCTTTCC ACCACTGGGT CCCAGCGATT
  GAACCCAGGT CATCAGGCTT GGTAGCAAGT GGGTACACTG AGCCATCTCA CTGGTCCTTT
  GATGCTCAAT TAGATGGGAT TAGAATCTCC ATGGAAACAC TCCTTTGGCT GCTACTAGGA
  GGGTATTTCC AGAAAGGTTA AAGAGGAAGA CCAAGGTGGG ATGCAGGTGA CAACATCCTG
  TGGGCTGGGA TCCTGAAATG AAACAGAGAA AGTGAGTGAG CGCCAGCATC CCCCTCTTCC
  Y
  TCCCTCCCCC CCCCCATTGC CTCTGCTCCC CAGGCCTTCT CTGTCATCTT AGTATATTTG
  GCTGGAACAA ACACCCTGTC TTTAAATTGC TTCTTGTGAG CTATTTGGTC ACAGCATGGA
  GATAAGTAAT GAATATAAAC GGAACACAGT CCTCTACCTC TGATGTGGCG CATCCCTTTA
  AGAGGTGCCG CAGGTATTTT GGTTACAGCT CTACAGAGGT AACTAACTAA CCCAGTCAAT
  GACCTCCTCA AAGCAAGGTG AGTGCAGGCA GGGGCAGCGG GAGCCTTCTA GAGACCAGGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45832188	mCV24556758	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29543857					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144178947 () rs orientation: forward

Symbol	Name	Function Class
2900089D17Rik	RIKEN cDNA 2900089D17 gene	within coordinates
Tssr54396	transcription start site region 54396	1853 bp downstream