rs29544499 SNP Detail

Summary

• ID
  rs29544499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:116730046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC CGCCATCTGC ATAACAAAAG
  Y
  CCGCAGGTCT GAGGAGGAGA AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45831411	mCV24902562	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss51804014	NES14719121	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C
ss149139050	ENSMUSSNP207764	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29544499					SNP	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804014	NES14719121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116730046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16401	CpG island 16401	within coordinates
Rr618511	regulatory region 618511	1598 bp distal
Rr618512	regulatory region 618512	within coordinates
Rr618513	regulatory region 618513	1287 bp proximal
Rr618514	regulatory region 618514	1321 bp proximal
Srrm4	serine/arginine repetitive matrix 4	170 bp upstream
Tssr52867	transcription start site region 52867	504 bp upstream
Tssr52868	transcription start site region 52868	194 bp upstream
Tssr52869	transcription start site region 52869	157 bp upstream
Tssr52870	transcription start site region 52870	122 bp upstream