rs29544591 SNP Detail

Summary

• ID
  rs29544591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105280704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTCCGT TTGAACAATT
  CCTAAAACAA TAAAAGTAAA AATCTGTATG ATCCAGAGAT CCCATTTCTA TGCATAACTA
  ATTGTTAATC TTCATTGTTG ACTTGATGGA ATTTTAATTC AAATTTCTGG TCATTTCTAT
  GAGGGGTTGT CTAGATGACA TAGCATGGGG AGACCCATCC TAAAGAAGAG TGGTCCTATT
  Y
  CATTGGCTGG GTCTCAACCT GAAGGAAAAG GAGGAAGAGA ACAGAACACA GCTTTTGTTC
  CTCGGCTTCA CAGTAGTAGA GGAGATGTGA CCAACTGCCT CATGTTCCTG ATGACTGACT
  TGATGGGCTC TTGTAGAATC TCTTAGTAAG CATCACCCGT CAATAAGAAA AGCCTACAGC
  CAATGAGCTG AGGCAGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45829455	mCV23375054	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148988998	ENSMUSSNP579044	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29544591					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105280704 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1052 bp upstream
Tssr52267	transcription start site region 52267	1506 bp upstream
Tssr52268	transcription start site region 52268	1452 bp upstream
Tssr52269	transcription start site region 52269	1377 bp upstream
Tssr52270	transcription start site region 52270	1215 bp upstream
Tssr52271	transcription start site region 52271	1097 bp upstream
Tssr52272	transcription start site region 52272	1034 bp upstream
Tssr52273	transcription start site region 52273	956 bp upstream
Tssr52274	transcription start site region 52274	925 bp upstream
Tssr52275	transcription start site region 52275	900 bp upstream
Tssr52276	transcription start site region 52276	866 bp upstream
Tssr52277	transcription start site region 52277	850 bp upstream
Tssr52278	transcription start site region 52278	823 bp upstream
Tssr52279	transcription start site region 52279	761 bp upstream
Tssr52280	transcription start site region 52280	710 bp upstream
Tssr52281	transcription start site region 52281	679 bp upstream
Tssr52282	transcription start site region 52282	662 bp upstream
Tssr52283	transcription start site region 52283	576 bp upstream
Tssr52284	transcription start site region 52284	519 bp upstream
Tssr52285	transcription start site region 52285	487 bp upstream
Tssr52286	transcription start site region 52286	457 bp upstream
Tssr52287	transcription start site region 52287	442 bp upstream
Tssr52288	transcription start site region 52288	428 bp upstream
Tssr52289	transcription start site region 52289	348 bp upstream
Tssr52290	transcription start site region 52290	241 bp upstream
Tssr52291	transcription start site region 52291	90 bp downstream
Tssr52292	transcription start site region 52292	569 bp downstream
Tssr52293	transcription start site region 52293	739 bp downstream
Tssr52294	transcription start site region 52294	836 bp downstream
Tssr52295	transcription start site region 52295	1154 bp downstream
Tssr52296	transcription start site region 52296	1776 bp downstream
Tssr52297	transcription start site region 52297	1854 bp downstream
Tssr52298	transcription start site region 52298	1947 bp downstream