rs29545515 SNP Detail

Summary

• ID
  rs29545515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10608366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAATGTA ATAATAAAAT
  AACCACATAT AACATACTAG CAACTTGCAA AATTTCTTTC ACTCCAAAAT CATATTGCTG
  CGCCAGGTGT GGTGCCACAC ACCTTTGATT TCTTTTGGTG CTCAGCAGCA CCAAAGGAGG
  CCGGAGGATC TCACAGTTCA AGGCCAGCCT GGTTTACACA AAGAAACTGT CTCAAAAAAG
  R
  AAGAAAACAA AAGCTGAACG AGGAAAAACA ATATGGTGCT TTCCTCGGAA AGGGATTATG
  TAAATACTAA TAAGCCAGGA CACATTTTGT TCAAAGAACT AAGATTCTAA TGCCTGGCCT
  AAGAAGAATA TCCGTGCCTT TAAAAAGGAG GGACAGTGTG TCTACTACAA TTTGTTTCCT
  CAGATGCTAA AGCTCTGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss39585921	mCV27569881	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146607037	ENSMUSSNP2938661	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss325524287	CHEV_18_10608364	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29545515					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10608366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1066 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	758 bp proximal
Rr533779	regulatory region 533779	1389 bp proximal
Rr533780	regulatory region 533780	1733 bp proximal
Rr533781	regulatory region 533781	1749 bp proximal
Tssr152429	transcription start site region 152429	1682 bp downstream
Tssr152430	transcription start site region 152430	1758 bp downstream
Tssr152431	transcription start site region 152431	1903 bp downstream
Tssr152432	transcription start site region 152432	1935 bp downstream
Tssr152433	transcription start site region 152433	1980 bp downstream