rs29545868 SNP Detail

Summary

• ID
  rs29545868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163444275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCCGA GGCCTCAGTT
  TCCCCACCCG AAACCCAACT CAGCTGCACA GCCGGGGCCA CCAGGTGGTG TCAAGCCCCA
  AGTCAGCACT ACAAAGTTCA CTCATGCGCA TTCCCGGATG GGCGCCGCCT ACACGCGGCT
  CGAGCGTCAC TTCCGGCGCG AGGGCCGGGC CGGCCGGCCG GGGAGTGCGG GTCTGTTCTG
  Y
  GCGCGCTGCC AGCCGAGGCT CCTGCCGCCG TGACCCGCGC TCCGCCCGCC GCCGGGCTGG
  TGAGTGCCCA CGAGCCCGGG TGTGCGCCGA GGGGCCAGAG ATAGGGACCG GAGAGGGCGA
  GATCGCCGGA AGTGGGCCAG AGGGGCGGGA GACCCCAGGA AATGGGGACA CCTGGGGAGG
  GGGCGAAGAC CGGAAGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45333934	mCV23585552	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29545868					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163444275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12638	CpG island 12638			within coordinates
Rr397464	regulatory region 397464			184 bp upstream
Rr569433	regulatory region 569433			922 bp distal
Rr569434	regulatory region 569434			23 bp distal
Rr569435	regulatory region 569435			322 bp distal
Rr569436	regulatory region 569436			126 bp distal
Rr569437	regulatory region 569437			within coordinates
Tssr21475	transcription start site region 21475			46 bp downstream
Tssr21476	transcription start site region 21476			within coordinates
Ttpal	tocopherol (alpha) transfer protein-like			mRNA-UTR
				Noncoding-Transcript-Variant